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RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity
Manatee: detection and quantification of small non-coding RNAs from next-generation sequencing data