R toolkit for single cell genomics

Scripts for analysis used during the course

a take on ordination plots using ggplot2

a set of NGS pipelines

Mutual nearest neighbor graphs and data visualization for genomic population networks 🐙

R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR…

Basic RNAseq pipeline, from downloading FASTQ files to DEG and GO analysis. Coded in bash, Perl and R

Scripts for running multi-phenotype GWAS using mixed models with the R package "rrBLUP". Additional functionality includes phenotype transformations and enrichment of a-priori candidate genes.