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HuixiangDou: Overcoming Group Chat Scenarios with LLM-based Technical Assistance
General tools for genomic analyses.
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
Precision HLA typing from next-generation sequencing data
A structural variation pipeline for short-read sequencing
Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
Tools for manipulating biological data, particularly multiple sequence alignments
Check strandedness of RNA-Seq fastq files
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
STAR based ENCODE Long RNA-Seq processing pipeline
Predicting Google’s stock price using regression
In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA allel…
A Data Fusion Method for Multi Source (VCF4.0+) Structural Variation Analysis
A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files
Scripts, modules and notebooks for genome sequencing data analysis