Lists (15)
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Design patterns implemented in Java
Checkstyle is a development tool to help programmers write Java code that adheres to a coding standard. By default it supports the Google Java Style Guide and Sun Code Conventions, but is highly co…
Picocli is a modern framework for building powerful, user-friendly, GraalVM-enabled command line apps with ease. It supports colors, autocompletion, subcommands, and more. In 1 source file so apps …
MapDB provides concurrent Maps, Sets and Queues backed by disk storage or off-heap-memory. It is a fast and easy to use embedded Java database engine.
Reactive Streams Specification for the JVM
An Engine-Agnostic Deep Learning Framework in Java
The missing bridge between Java and native C++
Official code repository for GATK versions 4 and up
Provides examples and code snippets for the JGit Java Git implementation
JavaCC - a parser generator for building parsers from grammars. It can generate code in Java, C++ and C#.
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
An embeddable write-once key-value store written in Java
Java Statistical Analysis Tool, a Java library for Machine Learning
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
A high-performance implementation of the R programming language, built on GraalVM.
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Flow Visualization Library for JavaFX and VRL-Studio
Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
A Java API for high-throughput sequencing data (HTS) formats.
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Visualization and analysis software for Hi-C data -