C library for high-throughput sequencing data formats

Cloud-native genomic dataframes and batch computing

A Java API for high-throughput sequencing data (HTS) formats.

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

This vCard PHP library can easily parse or generate/export vCards as .vcf

Haplotype VCF comparison tools

✂️ ⚡ Rapid haploid variant calling and core genome alignment

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

cython + htslib == fast VCF and BCF processing

A collection of scripts and notes related to genomics and bioinformatics

Structural variant toolkit for VCFs

annotate a VCF with other VCFs/BEDs/tabixed files

Bayesian genotyper for structural variants

The Pharmacogenomic Clinical Annotation Tool

Automate deployment and configuration of nested VMware Software-Defined Data Center environments including solutions like vSphere, vSAN, NSX, vSphere Kubernetes Service, Avi Load Balancer, Aria Operations for Logs, VCF 9, VyOS, and ISC BIND.

Toolset for SV simulation, comparison and filtering

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Personal Cancer Genome Reporter (PCGR)

machine learning for genomic variants

vCard Serializer and Parser for C#