A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

Rust crates for working with Workflow Description Language (WDL) documents.

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Visual Studio Code extension for Sprocket.

A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.

Create WDL documentation using Markdown.

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

Workflow for metagenome assembly

WDL tasks for commonly used BFX tools

Broad fungal method repository

[Experimental] Workflow Definition Language (WDL) to CWL

A collection of tasks wrapped in WDL

Pipeline to characterize Human Endogenous Retrovirus (HERV) expression

WDL pipelines for the Sentieon tools

Request for Comments (RFCs) on the St. Jude Cloud Project.

Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them

Run Sprocket as part of a CI/CD pipeline with GitHub Actions.

Variant Calling and Annotation using PacBio Hi-Fi Reads

A workflow for processing metagenomics data sets using Centrifuge. Category:Single-Sample