AbLang: A language model for antibodies

Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python

Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠

Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

AbLang: A language model for antibodies

An R package for simulating serosurvey data using custom models for the data-generating process

Peptide Microarray Workflow. Python, open-source

Code repository for Master Thesis "Antibody-antigen binding affinity prediction through the use of geometric deep learning"

Integrated LC-MS/MS-based de novo sequencing of antibody chains in complex mixtures

Benchmarking computational methods for B cell receptor reconstruction from single cell RNA-seq data

A WebApp for Antibody Research

Prediction of hydrophilicity & antigenic determinants from protein sequences

PyMOL wizard for performing molecular dynamics simulations with OpenMM.

An R package and framework for epitope-specific antibody profiling for the data obtained with the Bead-Based Epitope Assay (BBEA)

data and scripts of CMV cross-sectional serological study

Duke AIPI 520 Project 2 • Predicting Monoclonal Antibody Clinical Trial Success

This repo contains the code and data models that were used in the Harmony project.

Software for in silico identification of immunologically-vulnerable regions of the HCV E2 glycoprotein and broadly neutralizing antibodies that target them

Layer-wise selective Fine-Tuning of protein language models for Antibodies

Code and data for the ML analysis of humoral and cellular responses to SARS-CoV-2