Machine learning for NeuroImaging in Python
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Dec 19, 2025 - Python
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brain-connectivity
Here are 43 public repositories matching this topic...
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
python neuroscience spectrogram electrophysiology coherence frequency-domain brain-connectivity multitaper connectivity-measures canonical-coherence phase-lag-index spectral-granger-causality global-coherence
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Nov 7, 2025 - Python
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
workflow optimization networkx ensemble-learning networks fmri decision-trees nilearn fuzzy-logic multiverse brain-connectivity tractography nipype dipy gridsearch graph-neural-networks dmri ensemble-sampling
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Feb 1, 2024 - Python
Regression Graph Neural Network (regGNN) for cognitive score prediction.
regression brain-connectivity symmetric-positive-definite network-neuroscience riemannian-manifold graph-neural-networks gnn sample-selection cognitive-score matrix-parallel-transport geodesic-transport
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Apr 19, 2023 - Python
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
machine-learning neural-networks neuroimaging simulations fmri brain-connectivity brainweb activity-flow
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Mar 17, 2025 - Python
Python Machine Learning Toolbox for Brain Network Classification. Source codes are included of the top 20 teams in the Kaggle competition.
machine-learning machine-learning-algorithms feature-selection feature-extraction classification dimensionality-reduction data-processing brain-connectivity brain-networks brain-disorders
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Jun 2, 2020 - Python
How to fuse a population of graphs into a single one using graph neural networks?
machine-learning-algorithms network-analysis cbt brain-connectivity geometric-deep-learning brain-networks graph-neural-networks gnn network-integration network-fusion graph-fusion graph-integration brain-gnn atlas-learning
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Oct 24, 2023 - Python
Pythonic implementation of the Phase Transfer Entropy method using NumPy and SciPy
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Oct 31, 2024 - Python
MultiGraphGAN for predicting multiple target graphs from a source graph using geometric deep learning.
generative-adversarial-network gan graph-generation brain-connectivity predictive-learning geometric-deep-learning multimodal-deep-learning multi-view-learning brain-graphs predictive-intelligence source-graph target-graph morphological-brain-networks
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Apr 2, 2023 - Python
Graph SuperResolution Network using geometric deep learning.
data-generation brain-connectivity generative-models u-net deep-learning-architectures predictive-learning geometric-deep-learning network-neuroscience brain-graphs graph-superresolution gsr-net resolution-connectomes predictive-intelligence
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Jan 25, 2021 - Python
HCAE (HyperConnectome AutoEncoder) for brain state identification.
brain-connectivity graph-embedding morphological-brain-networks hyperconnectome hyperconnectivity hyperconnectome-autoencoder hypergraph-embedding multiview-graph distribution-alignment hypergraph-convolutional-layers hypergraph-autoencoding
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Oct 19, 2020 - Python
Predicting multigraph brain population from a single graph
deep-learning network-analysis connectomics brain-connectivity predictive-learning geometric-deep-learning network-neuroscience medical-dataset brain-networks graph-neural-networks gnn graph-augmentation generative-learning multigraph-generation brain-mapping
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Dec 10, 2022 - Python
MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
data-integration brain-connectivity biological-networks data-fusion multigraph network-neuroscience brain-networks graph-neural-networks graph-normalizer multiview-networks graph-integration connectomes
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Jun 6, 2022 - Python
Multigraph fusion and classification network using graph neural network
neural-networks mri-images brain-connectivity gcn deep-learning-framework network-neuroscience graph-neural-networks network-integration multiview-data network-fusion multi-view-networks multigraph-integration gender-differences data-heterogeneity brain-map multigraph-classification diff-pool ai4medicine
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Apr 15, 2022 - Python
Quantifying the Reproducibility of Graph Neural Networks using Multigraph Brain Data
deep-learning reproducible-research reproducible-science classification reproducibility sag brain-connectivity graph-convolutional-networks gcn multigraph graph-attention-networks network-neuroscience graph-neural-networks diffpool
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Jun 7, 2022 - Python
ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).
generative-adversarial-network gan data-generation multiplex graph-generation gender-classification connectome brain-connectivity brain-network graph-embedding predictive-learning geometric-deep-learning brain-networks predictive-intelligence morphological-brain-multiplexes brain-graph-translation predicting-brain-multiplexes
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Sep 20, 2020 - Python
Methods for estimating time-varying functional connectivity (TVFC)
python machine-learning neuroimaging fmri gaussian-processes nilearn sliding-windows connectome brain-connectivity functional-connectivity gpflow network-neuroscience time-varying-connectivity dynamic-functional-connectivity wishart-processes dynamic-conditional-correlation fcest mgarch
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May 24, 2024 - Python
A differentiable program for mapping brain function
time-series image-processing neuroimaging fmri brain-imaging brain-connectivity differentiable-programming
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Oct 25, 2024 - Python
Multigraph generation from a source graph.
brain-connectivity graph-convolutional-networks adversarial-learning gnns graph-neural-network graph-topology multiview-data generative-learning multigraph-generation multiview-connectome
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Nov 16, 2022 - Python
Napari-based 3D cell segmentation software using machine learning predictions as inputs, especially for EM image stacks of brains
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Aug 31, 2023 - Python
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