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daphnia

Here are 8 public repositories matching this topic...

nf-GeneFamilyEvolution

connor122721 / nf-GeneFamilyEvolution

Daphnia gene family evolution.

nextflow evolution selection daphnia gene-family-evolution

Updated Mar 31, 2025
R

adc0032 / dpulicaria_genomics

This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplifie…

bioinformatics genomics assembly daphnia

Updated Sep 2, 2021
Shell

connor122721 / CNV-Analysis

Quantify structural variants in clonal Daphnia genomes

r population-genetics copy-number-variation structural-variation daphnia

Updated Apr 16, 2023
R

connor122721 / methyl_farnesoate_reproduction

Effects of methyl farnesoate on male production in Daphnia pulex clones

r hormone daphnia methyl-farnesoate

Updated Jun 3, 2024
R

connor122721 / geva_daphnia

Estimate age of single-nucleotide polymorphisms from genomes

bash r snps age-estimation daphnia

Updated Jun 3, 2024
Shell

SaiReyaMeka / daphnia-sex-biased-gene-expression

RNA-seq analysis of sex-biased gene expression in Daphnia pulex using R.

bioinformatics gene-expression rnaseq daphnia

Updated Jun 25, 2026

connor122721 / SharedPolymorphismsDaphnia

Evolutionary genomics of shared mutations within the Daphnia pulex species complex.

evolution genetic-diversity balancing-selection single-nucleotide-polymorphisms daphnia

Updated Feb 16, 2025
R

connor122721 / obtusa

Nextflow pipeline for de novo hifi genome assembly for Daphnia obtusa

nextflow denovo-assembly dotplot non-model-species daphnia

Updated Feb 26, 2025
Nextflow

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