daphnia

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adc0032 / dpulicaria_genomics

This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplifie…

bioinformatics genomics assembly daphnia

Updated Sep 2, 2021
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connor122721 / geva_daphnia

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Estimate age of single-nucleotide polymorphisms from genomes

bash r snps age-estimation daphnia

Updated Jun 3, 2024
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