Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

Python implementation of the paper "Discrete Differential-Geometry Operators for Triangulated 2-Manifolds" by Meyer et. al. VisMath 2002

ArchGeo library code for the paper "Discrete Orthogonal Structures"

This repository contains the python implementation of the paper titled "Discrete Differential-Geometry Operators for Triangulated 2-Manifolds" by Meyer et. al. VisMath 2002 http://multires.caltech.edu/pubs/diffGeoOps.pdf

Riemannian geometry in JAX

Matlab and Python code to compute perturbed topological signatures (PTS), an efficient topological representation that lies on the Grassmann manifold.

Code-repository for the ICML 2020 paper Fairwashing explanations with off-manifold detergent

Pose refinement with differentiable rendering

A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.

Calculates the eigendecomposition of the Laplace-Beltrami operator on charts of Riemannian manifolds. Moved to https://git.sr.ht/~jmbr/laplace-beltrami-eigensolver

String theory geometry toolkit

Graph dynamical systems library

A Python package for information-geometric and information-topological analysis of mathematical models

Building geometric objects using blending techniques and global deformations

Python library for differential geometry, providing numerical tools for intrinsic geometric computations and PDE solving.

I built this web app with the Dash open source framework to showcase my publications and web projects.

A toolkit to manipulate n-dimensional geometric curves in Python ➰

General Relativity Utilities in Python

Drafts of textbooks. One on the math inspired by supersymmetric field theories. One on low dimensional (below 3+1) integrable physics.

A symbolic differential form library for python