DNAxplorer by BisdakBioTech is our final project submission for LBYBE1B. Submitted by Raphael C. Murillo and Niru Miguel Dagoy

Implementation of LAVA algorithm in Seq language.

Nextflow pipeline for disease QTL mapping and follow up analyses

Jupyter notebooks for BFG-PCA related simulation and analysis.

AI/ML bioinformatics portfolio covering mutation impact, biomarkers, SNP mapping, regulatory genomics, expression modeling, and TF binding

University work. Approximate aligner for long DNA sequences. Estimates Jaccard similarity from k-mers via minimizers and MinHash, then uses it as a sequence identity proxy.

🧩 Representation of Small Genomes using the Chaos Game.

Taxonomic classification of DNA sequences using BLAST or vsearch with configurable identity thresholds and batch processing

Assessing tumor heterogeneity in bulk tumor DNA. Simulation of reads from a phylogenetic prior.

This repository contains the code and data for recognizing promoters in human DNA sequences using deep learning techniques.

computational analysis for the ATRAID paper

This a repository for WPI BB2950 Molecular Biology B Term 2017

DNA sequencing with greedy algorithm

This is a web application to count the nucleotides composition in a DNA sequence sample.

HCAT GUI is a visual tool to analyze and manipulate DNA sequence data.

This was a project for my bioinformatics class. We studied a couple of motif finding algorithms for finding a potential motif in n many randomly generated DNA sequences. This project 1) randomly generates n many DNA sequences 2) randomly generates a kmer 3) edits up to d many positions in that kmer & inserts that kmer (now motif) into each seque…

A simple game to teach an unspecialized audience how sequencing techniques work.

A tool that parses VKGL variant classification data from public releases, connects variants across time and provides insights by visualizing different aspects.

Aligning Mysterious Reads

Clustering DNA reads by barcodes from raw reads. Old code written for my master-thesis.