Small Animal Magnetic Resonance Imaging via Python.

Tools for creating full TVB models from individual anatomical scans

Reconstruction of preprocessed q-space images (dMRI)

This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

Software that functionally segments white matter connections to generate task-specific subcomponents of fiber bundles.

Pyneapple is an advanced tool for analysing multi-exponential signal data in MR DWI images.

Perform fixel based analysis on DWI data

A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

Python toolkit for fast estimation of IVIM & Kurtosis diffusion MRI parameters using Machine Learning (Random Forest, Extra Trees, MLP).

DDSeg-PyTorch: PyTorch Implementation of DDSeg for Diffusion MRI Segmentation (MATLAB-Aligned)

Code used for study design, MRI data processing, statistical analysis and figures in the article U-shape short-range extrinsic connectivity organisation around the human central sulcus

Diffusion Weighted Imaging (DWI) line artifact removal

Plone 5 Content Type für lzv.nrw

Scripts in Python and R to reformat a PHILIPS gradient scheme to SIEMENS format

PUMI: neuroimaging Pipelines Using Modular workflow Integration