Official AFNI source and documentation
Small Animal Magnetic Resonance Imaging via Python.
Introduction to dMRI
Tools for creating full TVB models from individual anatomical scans
Reconstruction of preprocessed q-space images (dMRI)
This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients
MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
Gray-matter Based Spatial Statistics
A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)
to.science API – repository for electronic documents and bibliographic data
Software that functionally segments white matter connections to generate task-specific subcomponents of fiber bundles.
Pyneapple is an advanced tool for analysing multi-exponential signal data in MR DWI images.
Pipeline to process anatomical data, including microstructure metrics from DWI and MT data
Rdf and html forms for to.science (Toolbox Open Science). Injected via javascript.
cDWI, cDTI, cardiacDTI, design of DWI sequences (SE, STEAM, TRSE), gradient sampling shells, processing helix angle (HA), sheet angle (E2A, SA), transverse angle (TA)
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