fasta

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

Generate unique KMERs for every contig in a FASTA file

Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.

A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses

genomic alignment similarity search tool

A Pedantic FASTA Parser and Tool Set

BWK awk modified for biological data

faops operates fasta files

C/C++ fasta files parser library

A tool that finds a nucleic sub-sequence string ( from a FASTA file ) in a FASTA file using the fourier transform.

Quick Indexing Compresssed FASTA tool

Command-line application to filter sequences by length in FASTA files.

Small and fast FASTA sequences length fetcher

Command-line application to generate FASTA files with random sequences.

Computes gc contents in prokaryotic genomes

Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)

A lightweight, zlib-inspired C library for efficient reading and processing of FASTA, FASTQ, and other sequence file formats.

TUI sequences viewer