Gene Set Coexpression Analysis

GMT files for the mulea R package

enabling pathway analysis of curated chip-seq data

Script that converts MSigDB '.gmt' files into a tab-delimited gene-set ready for use in 'Genomica'

Analysis of enrichment of gene sets with a GUI and CLI

Reference implementation of the paper Redundancy-aware unsupervised ranking based on game theory - application to gene enrichment analysis

A web application for exploring, analyzing, and curating pathway databases

COVID-19 Crowd Generated Gene and Drug Set Library

An R package containing tools to prepare, analyze, and visualize named lists of sets, with an emphasis on molecular signatures (such as gene sets).

A template package for integrating new pathway databases to ComPath

A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)

UVA DSI Capstone :: Gene Set Creation Algorithm for Microarray Studies with Low Sample Size

🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R

Fast Single-Sample Gene Set Enrichment Analysis (ssGSEA) and Post-Translational Modification Signature Enrichment Analysis (PTM-SEA).

muleaData is an ExperimentHubData Bioconductor package for the mulea R package

Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data

Package to analyse gene sets

Ready-to-use curated genesets for cinaR

📉 Non-parametric rank enrichment test for binary data.