A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)

An R package containing tools to prepare, analyze, and visualize named lists of sets, with an emphasis on molecular signatures (such as gene sets).

🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R

Fast Single-Sample Gene Set Enrichment Analysis (ssGSEA) and Post-Translational Modification Signature Enrichment Analysis (PTM-SEA).

Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data

muleaData is an ExperimentHubData Bioconductor package for the mulea R package

Package to analyse gene sets

Ready-to-use curated genesets for cinaR

💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …

Package to calculate functional similarity between genes https://biocor.llrs.dev

Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

Experimental version of data package associated with chipenrich

Gene sets and functions for working with them.

Code and resources related to the olfactory regeneration project

R wrapper for ermineJ

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

An r interface to perform ROMA

Lightweight Iterative Gene set Enrichment in R

MSigDB gene sets for multiple organisms in a tidy data format

Evolutionary Transcriptomics with R