Gene sets and functions for working with them.

An r interface to perform ROMA

Code and resources related to the olfactory regeneration project

Package to analyse gene sets

Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data

A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)

Ready-to-use curated genesets for cinaR

💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …

muleaData is an ExperimentHubData Bioconductor package for the mulea R package

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

Lightweight Iterative Gene set Enrichment in R

R wrapper for ermineJ

Experimental version of data package associated with chipenrich

MSigDB gene sets for multiple organisms in a tidy data format

An R package containing tools to prepare, analyze, and visualize named lists of sets, with an emphasis on molecular signatures (such as gene sets).

Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

Package to calculate functional similarity between genes https://biocor.llrs.dev

Evolutionary Transcriptomics with R

🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R