Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

Evolutionary Transcriptomics with R

MSigDB gene sets for multiple organisms in a tidy data format

Lightweight Iterative Gene set Enrichment in R

An r interface to perform ROMA

R wrapper for ermineJ

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

Code and resources related to the olfactory regeneration project

Experimental version of data package associated with chipenrich

Gene sets and functions for working with them.

muleaData is an ExperimentHubData Bioconductor package for the mulea R package

Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data

Package to analyse gene sets

Ready-to-use curated genesets for cinaR

Package to calculate functional similarity between genes https://biocor.llrs.dev

💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center …

Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

An R package containing tools to prepare, analyze, and visualize named lists of sets, with an emphasis on molecular signatures (such as gene sets).

A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)

🧬 Toolkit for Evaluating Gene Sets as Phenotype Markers in R