NicheNet: predict active ligand-target links between interacting cells
LIANA+: an all-in-one framework for cell-cell communication
LIANA: a LIgand-receptor ANalysis frAmework
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
DrugHIVE: Structure-based drug design with a deep hierarchical generative model
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
Cell-Cell Interaction Discovery in Single Cell RNA Sequencing
Intercellular communication analysis for scRNA-seq data
LIANA x Tensor-cell2cell Protocols
A quick and dirty virtual screening task for potential ligands of Flavobacterium johnsoniae Tyrosine Ammonia Lyase (FjTAL)
Interpretable spatial graph framework integrating pathway and ligand–receptor priors with tissue architecture. Generates pathway maps and H&E overlays that reveal how tumors organize and rewire signaling in space.
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