LIANA+: an all-in-one framework for cell-cell communication
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Jan 24, 2026 - Python
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ligand-receptor
Here are 12 public repositories matching this topic...
NicheNet: predict active ligand-target links between interacting cells
rna-seq gene-expression network-inference data-integration single-cell-rna-seq single-cell-omics intercellular-communication ligand-receptor ligand-target cell-cell-communication
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Nov 12, 2025 - R
Interpretable spatial graph framework integrating pathway and ligand–receptor priors with tissue architecture. Generates pathway maps and H&E overlays that reveal how tumors organize and rewire signaling in space.
reproducible-research pathway-analysis graph-neural-networks interpretable-machine-learning spatial-transcriptomics tumor-microenvironment ligand-receptor concept-bottleneck deep-learning-in-biology
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Oct 4, 2025 - Jupyter Notebook
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
systems-biology scrna-seq single-cell differential-expression single-cell-rna-seq intercellular-communication ligand-receptor ligand-target cell-cell-interaction cell-cell-communication ligand-receptor-interaction intercellular-signaling
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Aug 12, 2025 - HTML
DrugHIVE: Structure-based drug design with a deep hierarchical generative model
python protein-structure pytorch generative-model drug-discovery drug-design hierarchical-models ligand-receptor structure-based ligand-receptor-interaction generative-ai structure-based-drug-design
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Oct 31, 2024 - Python
LIANA: a LIgand-receptor ANalysis frAmework
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Aug 7, 2024 - R
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
rna-seq database toolkit data-analysis single-cell ligand-receptor cell-cell-interaction cell-cell-communication
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Jul 1, 2024 - R
LIANA x Tensor-cell2cell Protocols
single-cell tensor-decomposition single-cell-rna-seq single-cell-omics ligand-receptor cell-cell-communication liana tensor-cell2cell
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Apr 30, 2024 - Jupyter Notebook
Cell-Cell Interaction Discovery in Single Cell RNA Sequencing
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May 16, 2022 - R
A quick and dirty virtual screening task for potential ligands of Flavobacterium johnsoniae Tyrosine Ammonia Lyase (FjTAL)
shell r ligand-screening virtual-screening molecular-docking autodock-vina ligand-receptor ligand-receptor-interaction
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Feb 20, 2022 - Shell
Intercellular communication analysis for scRNA-seq data
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May 31, 2021 - R
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