ASAFind latest version, with options for graphical output and ppc protein prediction

Deterministic, explainable energy-landscape analysis for cellular states in the Kira pipeline

Software package for https://doi.org/10.1016/j.celrep.2021.110000

visualization of the human mitochondrial genome

A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.

Module and script to remove contamination in assembled genomes before submission to ncbi

Automated mitochondrial genome assembly using SRA public data

Stand-alone tool for methylation-based discrimination of mitochondrial DNA ONT reads

Toolbox for Identifying Mitochondria Instance Segmentation Errors

Nanomito: An Amplification-Free Long-Read Workflow for Single-Molecule mtDNA Variant Calling and Deletion Quantification in Clinical Diagnostics

Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"

Platform that allows querying of mitochondrial-nuclear co-expression data, developed using Shiny

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

Simulation of space-embedded molecular aggregates using Potts model

Context-dependent pharmacology of cannabidiol: A two-pathway model linking mitochondrial VDAC gating and bioenergetic resilience to selective cytotoxicity

Source code for the HmtVar database, with a sample of the actual data to play with it locally.

Undergraduate Research Thesis Project for MHI 4980E at Western University

Stochastic simulator of mitochondria represented as a dynamic spaceless graph

Mechanistic QSAR models for key human health endpoints

Repository for proteomic data analysis used in the publication "Disruption of acetyl-lysine turnover in muscle mitochondria promotes insulin resistance and redox stress without overt respiratory dysfunction."