ncbi

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

R package to merge the NCBI taxonomy and the GBIF backbone taxonomy

Shiny app that plots NCBI genomes size versus protein count

Retrieve NCBI sequences, run pairwise and multiple alignments, and build phylogenetic trees in R. Needleman-Wunsch, Smith-Waterman and Neighbor-Joining.

An R code to convert NCBI data files into CSV

Workflow to match WCVP names with different taxonomic names as provided by BIEN, NCBI, GBIF

collection of data visualization scripts for the State of Amphibia report every 5 years

Data mining for NCBI genes

R package for entropy-informed detection of emerging viral variants and genomic surveillance. Implements per-site Shannon entropy, Gaussian mixture model site selection, Hellinger distance, and non-parametric change-point detection. Validated on SARS-CoV-2 Spike protein sequences from NCBI and GISAID databases.

[Xanthomonas campestris pv. campestris 8004] GCModeller genomics Modelling Project

Portfolio de bioestadística y bioinformática: workflows reales en R y Python — estadística multivariada, análisis de secuencias, alineamiento y filogenia.

Sequencing data preprocessing

Integrates gene annotation data from Ensembl, NCBI, UniProt, and STRING into a MySQL database using R.