A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

VAPiD: Viral Annotation and Identification Pipeline

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

Micro 612 genomics workshop

A simplified pipeline for ctDNA sequencing data analysis

Dockstore implementation of CGP core WGS analysis

GitHub for the SIB courses NGS - Genome variant analysis

Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment

less like viewer for fastq files

Reconstruction and analysis of viral and host genomes at multi-organ level

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

New computational framework to process and analyze KAS-seq and spKAS-seq data.

Utilities for analyzing next generation sequencing data.

DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.

Automated Pipeline for Variant/Haplotype Calling and Filtering

Pipeline to reconstruct the targeted dominant consensus genome of viral samples and analyze their within-host variability.

Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data