Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)
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Jul 29, 2017 - C
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normal-modes
Here are 21 public repositories matching this topic...
Classical MonteCarlo simulation using normal modes as coordinates
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May 25, 2018 - Python
Displace atomic coordinates along molecular normal modes.
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Jun 25, 2019 - Python
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Oct 9, 2019 - Python
Benchmarks for the effects of ocean. Compared between global solver SPECFEM3D Globe, regional solver RegSEM, and normal-mode calculations
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Mar 3, 2022 - Gnuplot
کدی برای نمایش نرمال مد های قسمت 4.1.2 ی کتاب موج بصورت انیمیشن
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Jul 15, 2022 - Python
A tool to perform quick normal mode analysis on a PDB file using Tirion's model.
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Oct 11, 2022 - C
Repository for seamlessly downloading, extracting and using helioseismic eigenfunctions and eigenfrequencies.
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Oct 21, 2022 - Python
Normal Modes at Planetary Scales
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Jan 1, 2023 - Fortran
MODE-TASK plugin for PyMOL
python pdb pymol-plugin protein-structure molecular-dynamics protein pymol pca molecular-dynamics-simulation tkinter mds trajectory-analysis tsne-algorithm principal-component-analysis md rmsd nma normal-modes pymode-task
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Apr 28, 2023 - C++
Fun simulations and numerical calculations for the everyday physicist.
monte-carlo quantum ising-model numerical-methods monte-carlo-sampling atomic-physics ising-model-2d normal-modes
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Sep 20, 2023 - Jupyter Notebook
High-precision physics engine dedicated to the study of standing waves and visualization of its normal modes.
frequency math simulation physics python3 waves vibration fourier physics-simulation oscillators harmonic cosine sine coupled normal-modes standing-waves
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Nov 15, 2023 - Python
PCA and normal mode analysis of proteins
python pdb molecular-dynamics protein molecular-dynamics-simulation mds trajectory-analysis tsne principal-component-analysis rmsd normal-modes
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May 16, 2024 - C++
Small utilities to deal with normal modes in molecular physics
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Jun 27, 2025 - Julia
A variant of FORTRAN code QSSP for calculating normal modes (dispersion curves) of a spherically symmetric earth with the atmosphere, mantle, liquid and solid core structure
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Jul 6, 2025 - Fortran
A comprehensive computational physics project that simulates wave dynamics through coupled oscillator systems, exploring normal modes, symmetry effects, and wave propagation phenomena.
python numpy computational-physics scipy matplotlib wave-simulation normal-modes mass-spring-systems coupled-oscillators
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Aug 8, 2025 - TeX
Setup, run and analyse Adaptive MDeNM simulations on CHARMM
molecular-dynamics molecular-dynamics-simulation charmm enhanced-sampling enm molecular-modeling normal-modes normal-mode-analysis elastic-network-models
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Aug 22, 2025 - Shell
Physics simulation visualizing normal modes of coupled oscillators with comprehensive testing and CI/CD
visualization education simulation physics pytest scientific-computing matplotlib normal-modes classical-mechanics coupled-oscillators
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Nov 23, 2025 - Python
Point symmetry analysis tool for theoretical chemistry objects
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Dec 2, 2025 - Python
A Python simulation of the double pendulum system using Lagrangian mechanics to demonstrate chaotic behavior.
visualization python numpy chaos computational-physics scipy matplotlib sympy chaos-theory numerical-simulations chaotic-dynamical-systems normal-modes double-pendulum lagrangian-mechanics non-linear-dynamics double-pendulum-simulation
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Dec 7, 2025 - Jupyter Notebook
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