A simple program to compare a rewritten assembly and it's pdb files against the original assembly

The scope of this module is downloading or reading PDB-Files and subsequently parsing them

Generation and visualization of 3d protein sequences

A lightweight C++ command-line tool to convert SMILES strings to PDB files with conformer generation using RDKit

Revolutionary PDB REST Gateway for remote Python debugging with AI assistance. Enables Claude Code and other AI assistants to debug Python applications programmatically via REST API and MCP server.

SurfStamp-pymol-plugin

source index testing

A suite of tools to help with molecular simulations/analysis

A PDB Viewer Application implemented completely in JavaFX

A tool designed to create rust FFI bindings for Factorio's compiled C++ classes, structs, and unions. Works by parsing the debug symbols contained in factorio.pdb

Project in the Durrant Lab at UPitt that wanted to re-use code from a previous neural network ligand-protein interaction software to extract features for ML

A "defuse the bomb"-style exercise for learning how to debug python

This script allows you to recode the B-factor column of a PDB/CIF file with any values. This is useful for using molecular visualisation programs like PyMOL, to color proteins, for example using PyMOL's spectrum function to recolor a protein according to mutational effects.

A Rust library for parsing PDB (Protein Data Bank) files

A console application for the ration calculation of amino acids from a PDB file.

Perl script to download pdb files and filter information about it.

My config for pdb++