A powerful PyMOL plugin for efficient high-throughput batch mutation, mutagenesis, and in-silico protein engineering via an intuitive GUI.

This repository contains rantom but useful scripts for all purposes analysis.

The align_and_color_with_selection.py script is a PyMOL plugin designed to streamline the comparison of two structural models. It performs structural alignment, highlights differing residues, and creates selections for these residues, making it a valuable tool for structural biologists analyzing homologous structures or variants.

GUI interface to pymolshortcuts.py.

This tool is particularly useful for studying water-mediated interactions in protein complexes and macromolecular structures.

PyMOL extension to map a protein pocket, generated from PockDrug, to the full protein structure.

Demo/experimental port of APBS plugin to PyQt for PyMOL 2.x.

Protein design tools as PyMOL plugin

A PyMOL script to calculate alpha carbon distances between two aligned protein structures

Assess the secondary structure in Pymol

Spherical Harmonics plugin/extension for PyMol

Pymol & ChimeraX Scripts for color

Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles

PDB plugin for PyMOL

A PyMol plugin for calculating Wu-Kabat Variability and displaying it on the pdb model

PyMOL plugin to modify molecular structure via turnstile rotation

PyMOL plugin to visualize interactions detected by the fingeRNAt program

Pymol Extension for the Visualization of the RNA pseudoknots.

An AI Assistant for the PyMOL molecular visualization software