A PyMOL plugin that enable ai-assistant. You can use human words to manipulate the molecule.
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Mar 25, 2026 - Python
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pymol-plugin
Here are 48 public repositories matching this topic...
Pymol & ChimeraX Scripts for color
color-picker pymol-plugin color-scheme pymol colormap viridis matplotlib-figures color-blind pymol-python chimerax chimerax-color matplotlib-colormap
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Mar 19, 2026 - Python
PyMOL plugin for visualizing RNA structural motifs
bioinformatics structural-biology pymol-plugin motif pymol rna-structure rna rfam bioinformatic rna-3d-motif-atlas
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Feb 27, 2026 - Python
Customized batch exhibition of three-dimensional molecules based on pymol framework
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Feb 18, 2026 - Python
GUI interface to pymolshortcuts.py.
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Feb 18, 2026 - Python
The CAVER PyMOL for modern PyMOL(^v2.5, ^v3.02; PyQt) using Caver 3.02 software.
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Feb 16, 2026 - Python
This is a plugin for PyMol 2.x to calculate and show the dipole moment vector of a proteine structure in pdb format.
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Jan 30, 2026 - Python
Pymol Extension for the Visualization of the RNA pseudoknots.
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Nov 27, 2025 - Python
A powerful PyMOL plugin for efficient high-throughput batch mutation, mutagenesis, and in-silico protein engineering via an intuitive GUI.
python plugin bioinformatics structural-biology pymol-plugin computational-biology pymol mutagenesis protein-design protein-engineering pybmw python-batch-mutation-wizard batch-mutation
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Nov 12, 2025 - Python
A PyMOL plugin for visualizing vibrations in molecules and solids
pymol-plugin computational-chemistry pymol computational-physics quantum-chemistry vibrational-spectroscopy theoretical-chemistry
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Oct 8, 2025 - Python
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
pdb scripting pymol-plugin startup-script molecular-graphics pymol aliases pml shortcuts structural-bioinformatics protein-structure-analysis molecular-artwork pymol-python agile-pymol biomolecular-artwork figure-making image-making efficient-programming agile-programming ergonomic-keyword-use
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Sep 19, 2025 - Python
calculate chemical bond strength in solids, surfaces and molecules
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Sep 6, 2025 - Python
parKVFinder: thread-level parallel KVFinder
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May 9, 2025 - Python
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
bioinformatics pymol-plugin pymol protein-sequences sequence-alignments homology-modeling protein-structures structural-alignments similarity-searches
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Feb 28, 2025 - Python
This is a plugin for PyMol 2.x to use the vina/Autodock fork SMINA under Windows 10 or 11 with the wsl2 linux subsystem installed.
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Feb 20, 2025 - Python
This tool is particularly useful for studying water-mediated interactions in protein complexes and macromolecular structures.
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Nov 30, 2024 - Python
The align_and_color_with_selection.py script is a PyMOL plugin designed to streamline the comparison of two structural models. It performs structural alignment, highlights differing residues, and creates selections for these residues, making it a valuable tool for structural biologists analyzing homologous structures or variants.
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Nov 27, 2024 - Python
This repository contains rantom but useful scripts for all purposes analysis.
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Oct 14, 2024 - Python
Assess the secondary structure in Pymol
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Oct 11, 2024 - Python
Docking viewer plug-in for PyMOL
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Oct 7, 2024 - Python
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