Dynamic Model

Code, data, and figures for an experimental pathogen exposure study using wood frogs and American bullfrogs

Analysis of Salmo trutta gametes and embryo microbiome project in Vals/Trun, Switzerland

Functions to explore, analyze, and visualize open data about salmon.

Datasets and related knowledge from the IYS Salmon Status and Trends workshops

Datasets and related knowledge from the International Year of the Salmon (IYS) "Salmon Status and Trends" workshops

Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity

Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD

DMVRAP shiny application

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

Spawner and fraction wild data for the NWFSC Status Reviews.

Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish

Scripts accompanying manuscript "The genomic basis of reproductive and migratory behaviour in a polymorphic salmonid"

Density of juvenile salmon in Caithness rivers - R-shiny dashboard

Some information about whether the log-normal correction should be used in escapement goal analysis.

R package for VRAP rewrite

Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.

R package for the VRAP program

Differential expression and allelic analysis, nonparametric statistics