Differential expression and allelic analysis, nonparametric statistics

An R package for the National Oceanic and Atmospheric Administration dam impact analysis

Datasets and related knowledge from the IYS Salmon Status and Trends workshops

Data from a longterm sea lice monitoring in the Broughton Archipelago, British Columbia, Canada by Alexandra Morton (Raincoast Research) and the Salmon Coast Field Station (salmoncoast.org)

Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

rCAX R package: an R client to access the REST API for the StreamNet Coordinated Assessments tables

Spawner and fraction wild data for the NWFSC Status Reviews.

Functions to explore, analyze, and visualize open data about salmon.

RNA-seq pipeline in R/Bash enables QC, alignment, read counting, and differential expression using Bioconductor; reproducible workflow on Ubuntu with Conda. 🐙

Repository for bulk RNA-seq analyses (from undergrad 2nd-3rd year) – Reorganized

Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.

R package for the VRAP program

Some information about whether the log-normal correction should be used in escapement goal analysis.

Code, data, and figures for an experimental pathogen exposure study using wood frogs and American bullfrogs

Dynamic Model

Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD

TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis

Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity

Datasets and related knowledge from the International Year of the Salmon (IYS) "Salmon Status and Trends" workshops