Highlights
- Pro
Stars
A single CLAUDE.md file to improve Claude Code behavior, derived from Andrej Karpathy's observations on LLM coding pitfalls.
Biological foundation modeling from molecular to genome scale
Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star
Scale-free Vertical Tracking Microscopy (a.k.a Gravity Machine) repo.
Examples of how to create colorful, annotated equations in Latex using Tikz.
In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence for changes in transmission advantage over time for the Omi…
Coronavirus COVID-19 (2019-nCoV) Data Repository and Dashboard for South Africa
Pyro models of SARS-CoV-2 variants
Hyperdrive is a secure, real time distributed file system
Extract COVID-19 age-specific mortality counts in U.S states and metropolitan areas
COVID-19 Projections Using Machine Learning
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Preprints from the BDI Pathogen Dynamics team regarding digital contact tracing and other non-pharmaceutical interventions for Covid-19. More details on our website:
urlwatch configuration to monitor state COVID-19 data
The COVID Tracking Project website
R code and documentation to estimate case fatality ratio of COVID-19 from cases outside China
Phylodynamic estimation of nCoV incidence and prevalence
Web app for visualizing pathogen evolution
This is a one-off Nextstrain build for SARS-like coronaviruses
Quilt is a Scientific Data Management Platform on AWS that helps teams and AI find, trust, and reuse data through deeply versioned, context-rich data packages.
Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
Sequence analysis and data visualization tool
viral-ngs: command line tools and wrappers for processing raw viral genomic data