Stars
paoloshasta / shasta
Forked from chanzuckerberg/shastaDe novo assembly from Oxford Nanopore reads.
CshlSiepelLab / argweaver
Forked from mjhubisz/argweaverSampling and manipulating genome-wide ancestral recombination graphs (ARGs)
lh3 / chromap
Forked from haowenz/chromapFast alignment and preprocessing of chromatin profiles
crazyhottommy / manta
Forked from Illumina/mantaStructural variant and indel caller for mapped sequencing data
aseetharam / Augustus
Forked from Gaius-Augustus/AugustusGenome annotation with AUGUSTUS
ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following…
JinfengChen / maffilter
Forked from jydu/maffilterThe MafFilter genome alignment processor
dayedepps / Jellyfish
Forked from gmarcais/JellyfishA fast multi-threaded k-mer counter
lran2008 / gatk_pipeline
Forked from ShujiaHuang/gatk_pipelineGATK Pipeline: Recalibrates mapping qualities and calls variants using GATK
nylander / prequal
Forked from simonwhelan/prequalPREQUAL: a pre-alignment quality filter for comparative sequence analyses
zhuochenbioinfo / smartie-sv
Forked from zeeev/smartie-svcalling SVs from Blasr contig level alignments
bioCKO / maf2synteny
Forked from mikolmogorov/maf2syntenyA tool for recovering synteny blocks from multiple alignment
binlu1981 / smartie-sv
Forked from zeeev/smartie-svcalling SVs from Blasr contig level alignments