Stars
Gaius-Augustus / TSEBRA
Forked from LarsGab/TSEBRATSEBRA: Transcript Selector for BRAKER
Pipeline codes for analyzing various genomics datasets based on MACS3
JinfengChen / biocode
Forked from jorvis/biocodeBioinformatics code libraries and scripts
gturco / find_cns
Forked from brentp/find_cnsfind conserved non-coding sequences (CNS)
Processing pipeline for pan-genome visulization and exploration
4ureliek / ratite-genomics
Forked from tsackton/ratite-genomicsScripts and other material for the assembly and analysis of ratite genomes.
gtrichard / HiCExplorer
Forked from deeptools/HiCExplorerHiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
harvardinformatics / Comparative-Annotation-Toolkit
Forked from ComparativeGenomicsToolkit/Comparative-Annotation-ToolkitBIGtigr / convCal
Forked from ztzou/convCalPython scripts for calculation of expected number of convergence in Zou and Zhang 2015
My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Fi…
zhuochenbioinfo / ABC-Enhancer-Gene-Prediction
Forked from broadinstitute/ABC-Enhancer-Gene-PredictionCell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
Best practices and workflow for genome annotation
binlu1981 / biocode
Forked from jorvis/biocodeBioinformatics code libraries and scripts
baozg / AnnoSINE
Forked from yangli557/AnnoSINESINE annotation tool for plant genomes
BIGtigr / go_enrichment
Forked from enormandeau/go_enrichmentTranscripts annotation and GO enrichment Fisher tests
zhaokai2014 / GFF3toolkit
Forked from NAL-i5K/GFF3toolkitPython programs for processing GFF3 files
binlu1981 / ucsc_tools
Forked from RLuisier/ucsc_toolsUCSC Bioinformatics Tools in a repo for easy install
fw1121 / quota-alignment
Forked from tanghaibao/quota-alignmentGuided synteny alignment between duplicated genomes (within specified quota constraint)
yuzhenpeng / pairLiftOver
Forked from XiaoTaoWang/HiCLiftConvert genomic coordinates of contact pairs from one assembly to another.
yuzhenpeng / funannotate
Forked from nextgenusfs/funannotateEukaryotic Genome Annotation Pipeline
sjswuitchik / snpArcher
Forked from harvardinformatics/snpArcherSnakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
Code and data for "Limited Utility of Residue Masking for Positive-Selection Inference," by SJS, ETD, COW.
aseetharam / mikado
Forked from EI-CoreBioinformatics/mikadoMikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
binlu1981 / FALCON
Forked from PacificBiosciences/FALCONFALCON: experimental PacBio diploid assembler
Snowseed / pyGenomeTracks
Forked from deeptools/pyGenomeTrackspython module to plot beautiful and highly customizable genome browser tracks
sea200k / TFforge
Forked from hillerlab/TFforgeIdentifying transcription factors involved in phenotypic differences between species
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Guided synteny alignment between duplicated genomes (within specified quota constraint)