Genomic Interactive Visualization Engine

SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.

A catalogue of available long read sequencing data analysis tools

A Whole Genome Alignment Visualization Tool for the Web

A JBrowse plugin to view multiple alignment format (MAF) files

A stand-alone application for constructing websites for visualizing and browsing synteny blocks

A program for detection of segmental duplications in large genomes

Phylogeny based detection of positive selection in gene families

A visualization tool for viewing MCscanX Synteny Collinearity files (outdated please check description or readme)