Stars
ML course materials for bioinformatics students following the Basic Machine Learning for Bioinformatics course at Utrecht University. Course created and taught by Dieter Stoker.
discovr package for R to accompany Discovering Statistics Using R and RStudio
Discovery of conserved gene clusters in multiple genomes
Now we have become very big, Different from the original idea. Collect premium software in various categories.
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
拙著『「アルゴリズム×数学」が基礎からしっかり身につく本』（2021/12/25 発売）の GitHub ページです。演習問題の解答や、C++ 以外のソースコードなどが掲載されています。ぜひご活用ください。
Efficient phylogenomic software by maximum likelihood
Course materials for NAU's BIO 682 (Quantitative Biology), Spring semester 2025.
Foldseek enables fast and sensitive comparisons of large structure sets.
Code samples from the "Python Cookbook, 3rd Edition", published by O'Reilly & Associates, May, 2013.
Example code for Fluent Python, 2nd edition (O'Reilly 2022)
Code for the book Grokking Algorithms (https://www.amazon.com/dp/1633438538)
The new Windows Terminal and the original Windows console host, all in the same place!
Repository for Introduction to Data Science Book
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
Main web site for Statistical Thinking for the 21st Century
Beginning PyQt-Second edition by Joshua Willman
Statistics One offered by Andrew Conwa of Princeton University on Coursera
John K. Kruschke's Doing Bayesian Data Analysis: A Tutorial with R and BUGS
BAsh-Based Automated Parallel Positive selection Analysis
A tool for generating consensus long-read assemblies for bacterial genomes