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pysylph Public
PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
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pycomsa Public
Cython bindings and Python interface to CoMSA, a compressor for multiple-sequence alignments.
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pyjess Public
Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!
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pyhmmer Public
Cython bindings and Python interface to HMMER3.
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papasmurf Public
A Platform-Accelerated Package for Alignment-free SMURF analysis.
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pyabricate Public
Pure Python port and interface to ABRicate, a tool for mass screening of contigs for antimicrobial resistance or virulence genes.
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pyncbitk Public
Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJul 29, 2026 -
pyfastani Public
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
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antismash Public
Forked from antismash/antismashantiSMASH
Python GNU Affero General Public License v3.0 UpdatedJun 7, 2026 -
gb-io.py Public
A Python interface to gb-io, a fast GenBank parser written in Rust.
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jinja2-fsloader Public
A Jinja2 template loader using PyFilesystem2.
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pytantan Public
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
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pyinfernal Public
Cython bindings and Python interface to Infernal 1.1.
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pytrimal Public
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
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pyopal Public
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
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lightmotif Public
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
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scoring-matrices Public
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
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pyfamsa Public
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
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pyrodigal Public
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
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jaccard.py Public
Pure-Python, array-library-agnostic utilities related to Jaccard indices.
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pymuscle5 Public
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
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pyaragorn Public
Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.
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pymemesuite Public
Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
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pyswrd Public
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.
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diced Public
A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.
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BioArchLinux-Packages Public
Forked from BioArchLinux/PackagesAim to be the bioinformatics repository with more and newer packages https://doi.org/10.1093/bioinformatics/btaf106
Shell GNU Affero General Public License v3.0 UpdatedFeb 26, 2026 -
pronto Public
A Python frontend to (Open Biomedical) Ontologies.
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hmmer Public
Forked from EddyRivasLab/hmmerHMMER: biological sequence analysis using profile HMMs
C Other UpdatedDec 21, 2025 -
pyphyml Public
Cython bindings and Python interface to PhyML 3.
Cython GNU General Public License v3.0 UpdatedDec 15, 2025
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