R for data science: a book

Dynamic Documents for R

An interactive graphing library for R

R toolkit for single cell genomics

Enhancing {ggplot2} plots with statistical analysis 📊📣

Make Complex Heatmaps

📊 A universal enrichment tool for interpreting omics data

Circular visualization in R

Inferring CNV from Single-Cell RNA-Seq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

R package for performing 2-sample MR using IEU OpenGWAS database

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

Publication-ready volcano plots with enhanced colouring and labeling

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

Fast Gene Set Enrichment Analysis

Differential expression of RNA-seq data using the Negative Binomial

Survival package for R

R package for MetaboAnalyst

A toolkit for single-cell immune profiling

Community-provided extensions to Seurat

TCGAbiolinks

A 'ggplot2' implement of Venn Diagram.

pathfindR: Enrichment Analysis Utilizing Active Subnetworks

Regression Modeling Strategies

🦠 A comprehensive R package for deep mining microbiome

R package to access DoRothEA's regulons

Convert Seurat objects to 10x Genomics Loupe files.

A companion R package for the MicrobiomeAnalyst web server