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Pull requests: biopython/biopython
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Implement z-scoring and gap optimization in CE Align
#4750
by Will-Tyler
was merged Jul 8, 2024
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3 tasks done
Remove error message if wheel is not installed
#4749
by hoodmane
was merged Jun 26, 2024
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3 tasks done
mmCIF writer should always write initial data_ token #4747
#4748
by KirilBourakov
was merged Jun 26, 2024
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3 tasks done
Replace \bpversion in API links with RST module links
Documentation
#4743
by peterjc
was merged Jun 10, 2024
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3 tasks done
Fix compiler warning in Bio/mottifs/_pwm.c
#4741
by mdehoon
was merged Jun 9, 2024
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3 tasks done
Use C code to parse alignments in which dashes represent gaps
#4737
by mdehoon
was merged Jun 7, 2024
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3 tasks done
Edits to allow manual setting of Entrez's cache path.
#4734
by meridiajane
was merged Jun 9, 2024
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3 tasks done
Misc test fixes including numpy 2 doctests for motifs
#4728
by peterjc
was merged May 13, 2024
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3 tasks done
Added 'U' to non-ambiguous nucleotides to calculate gc_fraction
#4727
by Lucandia
was merged Jun 26, 2024
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3 tasks done
Drop Python 3.8 support and deprecate 3.9 support
#4726
by peterjc
was merged May 13, 2024
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Drop CodeCov from CI (wasn't working)
#4723
by peterjc
was merged May 13, 2024
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3 tasks done
Improve warning message to help with debugging on very large structures.
#4714
by JoaoRodrigues
was merged Apr 29, 2024
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2 tasks done
Python 3.13: Replace deprecated PyEval_CallObject()
#4706
by penguinpee
was merged Sep 8, 2024
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Warn on writing INSDC-noncompliant feature and qualifier keys
#4703
by michaelfm1211
was merged Apr 15, 2024
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3 tasks done
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