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Pull requests list

Implement z-scoring and gap optimization in CE Align
#4750 by Will-Tyler was merged Jul 8, 2024 Loading…
3 tasks done
Remove error message if wheel is not installed
#4749 by hoodmane was merged Jun 26, 2024 Loading…
3 tasks done
mmCIF writer should always write initial data_ token #4747
#4748 by KirilBourakov was merged Jun 26, 2024 Loading…
3 tasks done
Update get_prosite_raw again
#4745 by peterjc was merged Jun 26, 2024 Loading…
3 tasks done
Replace \bpversion in API links with RST module links Documentation
#4743 by peterjc was merged Jun 10, 2024 Loading…
3 tasks done
variable name changes in _aligncore.c
#4742 by mdehoon was merged Jun 9, 2024 Loading…
3 tasks done
Fix compiler warning in Bio/mottifs/_pwm.c
#4741 by mdehoon was merged Jun 9, 2024 Loading…
3 tasks done
fix twoBIt compiler warnings
#4740 by mdehoon was merged Jun 9, 2024 Loading…
3 tasks done
kdtree compiler warning fix
#4739 by mdehoon was merged Jun 11, 2024 Loading…
3 tasks done
Use C code to parse alignments in which dashes represent gaps
#4737 by mdehoon was merged Jun 7, 2024 Loading…
3 tasks done
Update chapter_blast.rst
#4735 by yfarjoun was closed Jun 9, 2024 Loading…
1 of 3 tasks
Edits to allow manual setting of Entrez's cache path.
#4734 by meridiajane was merged Jun 9, 2024 Loading…
3 tasks done
Misc test fixes including numpy 2 doctests for motifs
#4728 by peterjc was merged May 13, 2024 Loading…
3 tasks done
Added 'U' to non-ambiguous nucleotides to calculate gc_fraction
#4727 by Lucandia was merged Jun 26, 2024 Loading…
3 tasks done
Drop Python 3.8 support and deprecate 3.9 support
#4726 by peterjc was merged May 13, 2024 Loading…
3 tasks done
Deprecate Bio.Entrez.egquery
#4725 by peterjc was merged May 13, 2024 Loading…
3 tasks done
Fix byte mode detection on BgzfWriter
#4724 by DavidCain was merged May 12, 2024 Loading…
Drop CodeCov from CI (wasn't working)
#4723 by peterjc was merged May 13, 2024 Loading…
3 tasks done
[Typo] Tutorial - Section 4.3.2.3
#4719 by joseribon was merged May 3, 2024 Loading…
2 of 3 tasks
Misc spellings flagged by codespell
#4716 by peterjc was merged May 1, 2024 Loading…
3 tasks done
fix typo
#4715 by kamurani was merged May 1, 2024 Loading…
Improve warning message to help with debugging on very large structures.
#4714 by JoaoRodrigues was merged Apr 29, 2024 Loading…
2 tasks done
Add BinaryCIF parser
#4707 by Will-Tyler was merged Jun 11, 2024 Loading…
3 tasks done
Python 3.13: Replace deprecated PyEval_CallObject()
#4706 by penguinpee was merged Sep 8, 2024 Loading…
Warn on writing INSDC-noncompliant feature and qualifier keys
#4703 by michaelfm1211 was merged Apr 15, 2024 Loading…
3 tasks done
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