Skip to content

Pull requests: biopython/biopython

Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort

Pull requests list

Replace assorted flake8 plugins with ruff equivalents
#4668 by peterjc was merged Mar 18, 2024 Loading…
3 tasks done
Add NEWS entry for new AlphaFold DB module
#4667 by Will-Tyler was merged Mar 15, 2024 Loading…
3 tasks done
Enable ruff check --fix, and pre-commit.ci autofix PRs
#4666 by peterjc was merged Mar 28, 2024 Loading…
3 tasks done
BigMaf: avoid reading the header twice
#4665 by mdehoon was merged Mar 15, 2024 Loading…
3 tasks done
Update PDBIO.py PDBIO.save with parameter write_ter
#4664 by pippo1990 was closed Mar 14, 2024 Loading…
2 of 3 tasks
Update PDBIO.py PDBIO.save with parameter write_ter
#4663 by pippo1990 was closed Mar 14, 2024 Loading…
2 of 3 tasks
Apply isort (forcing single lines, not sorting by type) via ruff
#4662 by peterjc was merged Jun 26, 2024 Loading…
3 tasks done
In bigbed parsing, avoid copying data
#4660 by mdehoon was merged Mar 14, 2024 Loading…
3 tasks done
Blast xml writer cleanup
#4659 by mdehoon was merged Mar 14, 2024 Loading…
3 tasks done
Blast xml2
#4657 by mdehoon was merged Mar 10, 2024 Loading…
3 tasks done
Pre-commit tools and black update
#4655 by peterjc was merged Mar 14, 2024 Loading…
3 tasks done
Fix typing on strictly_equals
#4653 by bzoracler was merged Mar 6, 2024 Loading…
3 tasks done
Add SSBond parsing to parse_pdb_header.py
#4649 by suchanek was closed Mar 13, 2024 Loading…
Add a writer to Bio.Blast
#4647 by mdehoon was merged Mar 4, 2024 Loading…
3 tasks done
Fix _assign_element to deal with 4 characters atom with last number.
#4645 by eunos-1128 was closed Jun 14, 2024 Loading…
3 tasks done
Static typing for Bio.PDB
#4641 by speleo3 was merged Feb 29, 2024 Loading…
3 tasks done
Fix inconsistent restriction digest cutting behaviour
#4638 by manulera was merged Jun 26, 2024 Loading…
3 tasks done
Flipping origin-spanning locations with strand=None
#4637 by manulera was merged Mar 15, 2024 Loading…
3 tasks done
Fixed bug in parsing of .CEL files in Affy submodule
#4635 by wejpurvis was closed Mar 1, 2024 Loading…
2 of 3 tasks
Update modules.ent
#4628 by eltociear was closed Jun 27, 2024 Loading…
2 of 3 tasks
Make SeqIO's import of MultipleSeqAlignment lazy.
#4627 by peterjc was merged Feb 13, 2024 Loading…
3 tasks done
remove unneeded imports
#4626 by mdehoon was merged Feb 12, 2024 Loading…
3 tasks done
Readme fixe
#4625 by ghost was closed Feb 11, 2024 Loading…
3 tasks
use regex on Bio.Nexus.Trees.Tree parser
#4624 by jrom99 was merged May 3, 2024 Loading…
2 of 3 tasks
ProTip! Adding no:label will show everything without a label.