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Pull requests: biopython/biopython
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Replace assorted flake8 plugins with ruff equivalents
#4668
by peterjc
was merged Mar 18, 2024
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3 tasks done
Add NEWS entry for new AlphaFold DB module
#4667
by Will-Tyler
was merged Mar 15, 2024
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3 tasks done
Enable ruff check --fix, and pre-commit.ci autofix PRs
#4666
by peterjc
was merged Mar 28, 2024
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3 tasks done
BigMaf: avoid reading the header twice
#4665
by mdehoon
was merged Mar 15, 2024
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3 tasks done
Update PDBIO.py PDBIO.save with parameter write_ter
#4664
by pippo1990
was closed Mar 14, 2024
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2 of 3 tasks
Update PDBIO.py PDBIO.save with parameter write_ter
#4663
by pippo1990
was closed Mar 14, 2024
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2 of 3 tasks
Apply isort (forcing single lines, not sorting by type) via ruff
#4662
by peterjc
was merged Jun 26, 2024
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3 tasks done
In bigbed parsing, avoid copying data
#4660
by mdehoon
was merged Mar 14, 2024
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3 tasks done
Remove type annotations from strictly_equals methods in Bio.PDB
#4651
by JoaoRodrigues
was closed Mar 6, 2024
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Fix _assign_element to deal with 4 characters atom with last number.
#4645
by eunos-1128
was closed Jun 14, 2024
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3 tasks done
Fix inconsistent restriction digest cutting behaviour
#4638
by manulera
was merged Jun 26, 2024
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3 tasks done
Flipping origin-spanning locations with strand=None
#4637
by manulera
was merged Mar 15, 2024
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3 tasks done
Fixed bug in parsing of .CEL files in Affy submodule
#4635
by wejpurvis
was closed Mar 1, 2024
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2 of 3 tasks
Make SeqIO's import of MultipleSeqAlignment lazy.
#4627
by peterjc
was merged Feb 13, 2024
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3 tasks done
use regex on Bio.Nexus.Trees.Tree parser
#4624
by jrom99
was merged May 3, 2024
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2 of 3 tasks
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