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Pull requests list

Downgrade exception to warning in case of entity id duplication.
#4623 by JoaoRodrigues was merged Feb 26, 2024 Loading…
3 tasks done
1
6
BSD dual license Bio.codonalign and Bio.Align.analysis
#4621 by peterjc was merged Feb 5, 2024 Loading…
3 tasks done
BSD dual licensing Bio.motifs.jaspar
#4620 by peterjc was merged Feb 5, 2024 Loading…
3 tasks done
1
add current DTD for clinvar esummary
#4619 by koopmann was merged Feb 5, 2024 Loading…
3 tasks done
1
2
Bio.Blast consistent with Bio.SearchIO
#4617 by mdehoon was merged Feb 11, 2024 Loading…
3 tasks done
Now also parsing the age (AG) and date (DT) fields.
#4616 by JudithBernett was merged Feb 2, 2024 Loading…
1
8
add biomoltrans to pdb header parsing and mmtf writing
#4613 by jamesmkrieger was merged Mar 1, 2024 Loading…
3 tasks done
37
Add module to interact with AlphaFold DB
#4608 by Will-Tyler was merged Mar 15, 2024 Loading…
3 tasks done
8
In PDBList, only create "obsolete" directory if necessary
#4607 by Will-Tyler was merged Jan 29, 2024 Loading…
3 tasks done
9
Update links to hmmer page and manual
#4606 by mmagnus was merged Jan 26, 2024 Loading…
3 tasks done
@bow
3
qblast add warning
#4605 by mdehoon was merged Jan 25, 2024 Loading…
3 tasks done
Update NCBIWWW.py
#4603 by AstraBert was merged Jan 24, 2024 Loading…
3 tasks done
Programmatic UniProt search
#4602 by Will-Tyler was merged Jan 31, 2024 Loading…
3 tasks done
16
Preserve branch length in Phylo.TreeMixin.prune if keep_root_length=True
#4601 by michaelfm1211 was merged Oct 2, 2024 Loading…
3 tasks done
1
14
Bump actions/cache from 3 to 4 dependencies Pull requests that update a dependency file
#4600 by dependabot bot was merged Jan 22, 2024 Loading…
Bump tj-actions/changed-files from 41 to 42 dependencies Pull requests that update a dependency file
#4599 by dependabot bot was merged Jan 22, 2024 Loading…
Add SeqIO support for GFA files.
#4598 by michaelfm1211 was merged Jan 26, 2024 Loading…
3 tasks done
1
30
Update NCBIWWW.py
#4596 by AstraBert was merged Jan 22, 2024 Loading…
2 of 3 tasks
1
11
Support all versions of SeqXML
#4594 by michaelfm1211 was merged Jan 22, 2024 Loading…
3 tasks done
1
4
Add method to test for strict equality between PDB entities
#4593 by Will-Tyler was merged Mar 5, 2024 Loading…
3 tasks done
24
Parallelize PDBList download methods
#4592 by Will-Tyler was merged Jan 21, 2024 Loading…
3 tasks done
9
Add a PDBML (PDB XML) parser
#4591 by Will-Tyler was merged Feb 24, 2024 Loading…
3 tasks done
10
Don't use record specific attributes in GenBank parser warning
#4590 by michaelfm1211 was merged Jan 19, 2024 Loading…
3 tasks done
1
1
Deprecate version parameter in Bio.motifs.Motif's weblogo method
#4588 by michaelfm1211 was merged Jan 18, 2024 Loading…
3 tasks done
1
4
Bio.Genbank.Record: alias attribute .name to .locus
#4587 by michaelfm1211 was closed Jan 18, 2024 Loading…
3 tasks done
1
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