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Pull requests list

Blast writer tests
#4702 by mdehoon was merged Apr 12, 2024 Loading…
3 tasks done
Avoid numpy2 scalar repr change in example
#4700 by peterjc was merged Apr 12, 2024 Loading…
3 tasks done
Update example (PDB description now uppercase)
#4699 by peterjc was merged Apr 11, 2024 Loading…
3 tasks done
Tweak to doctest examples for numpy2
#4697 by peterjc was merged Apr 11, 2024 Loading…
3 tasks done
Relax BGZF block test (failed with zlib-ng)
#4696 by peterjc was merged Apr 11, 2024 Loading…
3 tasks done
1
1
Improve CE Align
#4695 by Will-Tyler was merged Jun 12, 2024 Loading…
3 tasks done
20
Add support for reading PFM from Cys2His2 Zinc Finger Proteins PWM Predictor.
#4693 by ghuls was merged Jun 30, 2024 Loading…
3 tasks done
5
Numpy2 fixes for Bio.phenotype
#4691 by peterjc was merged Apr 11, 2024 Loading…
3 tasks done
[pre-commit.ci] autoupdate
#4690 by pre-commit-ci bot was merged Apr 4, 2024 Loading…
7
Bump tj-actions/changed-files from 43 to 44 dependencies Pull requests that update a dependency file
#4689 by dependabot bot was merged Apr 1, 2024 Loading…
Update Bio.Restriction to REBASE version 404 (April 2024)
#4687 by peterjc was merged Apr 2, 2024 Loading…
3 tasks done
3
Trying to figure out what is going wrong in the SeqXML parser
#4686 by mdehoon was merged Mar 31, 2024 Loading…
3 tasks done
2
In Bio.Align, deprecate infer_coordinates, and use parse_printed_alignment instead
#4684 by mdehoon was merged Mar 29, 2024 Loading…
3 tasks done
Double the SeqXML parser block size for libexpat 2.6.0
#4683 by peterjc was merged Mar 29, 2024 Loading…
3 tasks done
1
fix Bio.Cluster for numpy 2.0
#4682 by mdehoon was merged Mar 26, 2024 Loading…
3 tasks done
Fix Bio.Align.substitution_matrices for numpy 2.0
#4681 by mdehoon was merged Mar 26, 2024 Loading…
3 tasks done
Fix Bio.Align.bigBed for NEP50
#4680 by mdehoon was merged Mar 26, 2024 Loading…
3 tasks done
2
cleanup infer_coordinates in Bio.Align
#4679 by mdehoon was merged Mar 26, 2024 Loading…
3 tasks done
Bump geekyeggo/delete-artifact from 4 to 5 dependencies Pull requests that update a dependency file
#4678 by dependabot bot was merged Mar 25, 2024 Loading…
Cast MSA .length and .shape to Python int
#4677 by peterjc was merged Mar 26, 2024 Loading…
3 tasks done
4
Remove doctest that depends on endianness
#4674 by mdehoon was merged Mar 20, 2024 Loading…
3 tasks done
remove comment
#4673 by mdehoon was merged Mar 20, 2024 Loading…
3 tasks done
Bump tj-actions/changed-files from 42 to 43 dependencies Pull requests that update a dependency file
#4672 by dependabot bot was merged Mar 18, 2024 Loading…
bigBed big-endian
#4670 by mdehoon was merged Mar 18, 2024 Loading…
3 tasks done
Add a Blast XML2 writer
#4669 by mdehoon was merged Mar 17, 2024 Loading…
3 tasks done
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