Making whole bacterial genome sequencing data analysis easy

White Blood Cells detection (1st place)

A simple web application for keeping tracking of blood glucose levels. Written in Python using the Django framework.

Primer3Plus is an advanced web interface for primer3.

An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.

Imputing dropout events in single-cell RNA-sequencing data

A study to compare methods for clustering of scRNA-seq data

Accurate and robust imputation of scRNA-seq data

Large-scale single-cell integration of RNA-seq datasets

R package for analysing single cell data

Gene set scoring for single-cell data

A single-cell RNA-seq pipeline

R package for benchmarking single cell analysis methods

Benchmarking feature selection methods for scRNA-seq and spatially resolved transcriptomics

Batch balanced KNN

A R package for integrated scRNA-seq data analysis using the RPCI algorithm

benchmark for single-cell RNA-seq imputation methods

Shiny Interactive Web Apps for Single-Cell Data

Code for the empty droplet and cell detection project from the HCA Hackathon.

UniverSC: a flexible cross-platform single-cell data processing pipeline

A cellspecific mixing score to evaluate group-/batch-specific bias in scRNA seq datasets

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

scPred package for cell type prediction from scRNA-seq data

Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data

A flexible pipeline for complete analysis of bacterial genomes

Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods