Learn single-cell dynamics using neural differential equations

Survival Analysis and Visualization

A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.

Pyranges: a Python framework for ultrafast sequence interval operations

A list of awesome Linear resources, add-ons, integrations, links, etc.

This is the software for FAst Marginal Epistasis test (FAME)

"Paper2Slides: From Paper to Presentation in One Click"

Conveniently process a dictionary of anndatas

'ggplot2' Based Publication Ready Plots

R package for quality control of plink genetic datasets

R package for thematic maps

PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

Scalable framework for integrating single-cell omics with genetic data using AnnData.

Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data

A 'ggplot2' extension that focusses on expanding the plotter's arsenal of guides, such as axes, legends and colour bars. It brings various improvements to existing guides by re-implementation, as w…

Single-cell eQTL GWAS colocalization tool

Python tool for converting files and office documents to Markdown.

The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.

The AnnSQL package enables SQL based queries on AnnData objects.

Highlight points and lines in ggplot2

Universal multi-language runner and smart REPL written in Rust.