Call and score variants from WGS/WES of rare disease patients.

A comprehensive cancer DNA/RNA analysis and reporting pipeline

Longread PacBio sequencing processing for WGS and PureTarget

Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline 🧪🧬🖥️

A scalable Nextflow pipeline for automated WGS analysis, optimized for Oxford Nanopore and hybrid ONT–Illumina assemblies in clinical microbiology research.

Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.

Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow

Nextflow pipeline to convert FASTQ files to BAM for WGS and RNA-seq data

Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.

Pipeline designed to evalute FFPE processing kits through qc, variant calling, and truth set comparison analysis. Configured for AWS Batch deployment.