fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Whole Genome Sequencing analysis, WGS analysis

Call and score variants from WGS/WES of rare disease patients.

Snakemake-based workflow for detecting structural variants in genomic data

Analysis pipelines for genomic sequencing data

A comprehensive cancer DNA/RNA analysis and reporting pipeline

Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Kourami: Graph-guided assembly for HLA alleles

vSNP -- validate SNPs

Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)

Longread PacBio sequencing processing for WGS and PureTarget

经纬度转换，sqlldr入库，Geometry工具

Trim, Align to genome, Deduplicate, Realign WGS sequencing samples

A tool to genotype CYP2D6 with WGS data

Rapid determination of appropriate reference genomes.

A snakemake workflow for WGS-based tuberculosis transmission analysis

qq围棋wgs棋谱转sgf格式

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Workflow to construct linear representation of pan genome from deep WGS data and public assemblies