Snakemake-based workflow for detecting structural variants in genomic data

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

vSNP -- validate SNPs

A tool to genotype CYP2D6 with WGS data

Rapid determination of appropriate reference genomes.

Exome/Capture/RNASeq Pipeline Implementation using snakemake

A pipeline for Bacterial Whole genome sequence data analysis

DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions

(current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

A Snakemake pipeline for Quality Control of Whole Genome Sequencing data

As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.

vSNP -- validate SNPs

(current) Comprehensive WGS omics analysis pipeline ( reads to variants & QC ) : Sequence Platforms ( Illumina, PacBio, ONT, Ultima, Roche )

Snakemake-based workflow for generating artificial genomes with structural variants

Bioinformatics tool for Salmonella WGS analysis

Targeted Detection and Reconstruction of Plasmids

NGS Processing Pipelines for WGS and WES data