The Peaks software GitHub repository
bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.
SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)
blat with cluster parallel hybrid computing support
map and call next generation genomic sequencing
A tool for compression and analysis of DNA sequences
adaptive genome assembly using nanopore sequencing
Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
A dotplot generator for large chromosomes
Machine-learning-based general bacterial promoter prediction tool.
parallelized blat with multi-threads support
Evaluating genome assemblies
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Next generation sequencing reads de novo assembler.
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