An example RNA-seq pipeline with Nextflow and using public ENCODE data

Submission for the Bioinformatics Peer Prize 2018

Tutorial test

This code shows the validation of Differential Gene Expression Analysis from RNASeq data using as quantificator tools TPMCalculator

ALS implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair

RNAseq Data Analysis Course, Cambridge University Bioinformatics Training Facility, March 2019

Bioinformatics summer school @uclouvain la Neuve, Belgium

In the past several months, I have been having multiple interview done. Almost all the HM gave me some kind of challenge projects/analysis work. All were performed using public available datasets. Topics are mostly very diverse. Essence are all the same. How to utilize genomics/bioinformatics approaches to tackle a certain question, mostly biolo…

Supplementary material for regionReport paper

Example analyses using recount

Package for the recount workshop for BioC2017

Poster for Biology of Genomes 2019 (#bog19) on recount-brain

Introductory practical training on preprocessing and QC of RNA Seq data

Workflow for Transcript, Gene, and Gene Set network analysis 🧬📊✨

Code and analyses for the recount-brain project

Reproduce bioinformatics analysis for the manuscript: Muthel et al, 2019.

Script and pipeline for BRAINcode project