🧬 Reproduce and extend genomic and transcriptomic analyses of anti–PD-1 therapy response in metastatic melanoma using scalable bioinformatics workflows.

A collection of Galaxy-related training material

A course on genomics and bioinformatics from WashU

Análisis genómicos y transcriptómicos con plataforma NGS

Compilation of tools used in the Rashid lab for RNAseq data analysis and visualization

Impartido para estudiantes de posgrado, Curso de Heladia Salgado

Workshop • Intro to Bioinformatics using NGS data • 5 days

Shiny app for WGCNA for RNAseq and DNA methylation data

An easy pipeline to analyze data with Salmon.

Reproduction and analysis of RNA-seq and WES data to study response to anti–PD-1 immunotherapy in melanoma with HPC-based bioinformatics workflows.

HER2-Amplified vs Non-Amplified Breast Cancer Transcriptome Analysis (TCGA BRCA): Differential Expression, Pathway Enrichment, and Lasso-Cox Survival Stratification

Reproducible RNA-seq analysis (Salmon, tximport, DESeq2) — mouse dataset from Johns Hopkins Coursera course

Análisis de expresión diferencial de genes relacionados con la obesidad mediante RNA-seq

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

Repository for the Course "Laboratory of Advanced Bioinformatics for Omics Sciences", in the Curriculum "Molecular and Digital Biology" of the M.Sc. Molecular Biology and Genetics, University of Pavia

A shiny app for custom analyzes of preprocessed omics data

Analysis of bulk RNA seq and sc-RNA seq data for https://doi.org/10.1186/s12915-025-02138-6.

A book that discusses topics and contains tutorials relevant to population genomics

A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma

Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets