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Releases: nfidd/nfidd

nfidd 1.3.1

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@sbfnk-bot sbfnk-bot released this 30 Jun 09:32
5ce221e
  • removed an unused init_R argument from the renewal model (#652)
  • clarified the joint nowcasting session (#659)
  • updated the return link to point to the forecasting concepts session (#656)
  • renamed the mpox figure and credited its sources on the nowcasting slides (#665)

nfidd 1.3.0

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@seabbs seabbs released this 22 Jun 05:45
2b9a1b8

New release for 2026 teaching.

  • restructured the course to start with delay distributions, moving the probability and Stan introduction to reference and self-study material (#621)
  • dropped the unused gen_time_pmf argument from simulate_onsets() (#607)
  • replaced superseded transmute() with mutate() + select() (#606)
  • used N for the sample size in lognormal.stan to match gamma.stan (#605)
  • used the quantile_level column for the QRA weights filter (#603)
  • added a Stan model index reference page (#612)
  • enabled site search (#614)
  • added a real-time Rt exercise and callout to the renewal session (#615)
  • plotted the forecast reproduction number over the forecast horizon (#639)
  • added an optional dropdown on baselines to the forecasting concepts session (#641)
  • added missing ensemble forecasting citations and cited Bracher et al. 2021 for over/underprediction (#648, #604)
  • marked optional content consistently across the sessions and the timetable (#623, #625)
  • updated learning outcomes to match course content (#611)
  • corrected an overstated bias claim for ad-hoc censoring fixes (#634)
  • highlighted printed Stan models in rendered output (#643)
  • fixed broken LaTeX in the CRPS formula (#642)

nfidd 1.2.0

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@sbfnk sbfnk released this 13 Feb 12:39
bf3b0f7
  • made add_delays() more flexible with configurable delay distributions and hospitalisation probability (#584)
  • added save_warmup argument to nfidd_sample() (#584)
  • fixed Stan function extraction regex to handle array[] return types (#584)
  • fixed forecasting model to generate forecast random walk in generated quantities rather than extending estimated parameters (#585)
  • allowed zero-day delays in censored delay model (#585)
  • added forecasting to the joint nowcasting with R model (#585)
  • improved priors in joint nowcasting models (#585)
  • added Stan reference documentation pages (#586)
  • updated session content with improvements from SISMID (#587)

nfidd 1.1.2

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@sbfnk sbfnk released this 24 Jun 08:15
  • added the R version of condition_onsets_by_report()

nfidd 1.1.1

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@sbfnk sbfnk released this 23 Jun 19:10
  • adapted nfidd_cmdstan_model() to work with an include path option, and a model file name argument

nfidd 1.1.0

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@sbfnk sbfnk released this 23 Jun 05:19
  • fixed a bug in convolution function which affected the earliest part of convoluted time series #475.
  • renamed target_day to origin_day for clarity #465
  • added nffid_sample() function to speed up default inference #457
  • replaced vapply with for loop in convolve_with_delay for clarity #433
  • streamlined the use of logged and natural R #424
  • added the summarise_lognormal() function for mean/sd summarises #406

nfidd 1.0.0

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@sbfnk sbfnk released this 05 Nov 04:32

In development version of the package and teaching material for teaching in Bangkok in November 2024.

This included a complete redevelopment of the package where what previously were snippets are now functions.

nfidd 0.1.0

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@sbfnk sbfnk released this 30 Oct 15:05

Initial release