Releases: nfidd/nfidd
Releases · nfidd/nfidd
Release list
nfidd 1.3.1
nfidd 1.3.0
New release for 2026 teaching.
- restructured the course to start with delay distributions, moving the probability and Stan introduction to reference and self-study material (#621)
- dropped the unused
gen_time_pmfargument fromsimulate_onsets()(#607) - replaced superseded
transmute()withmutate()+select()(#606) - used
Nfor the sample size inlognormal.stanto matchgamma.stan(#605) - used the
quantile_levelcolumn for the QRA weights filter (#603) - added a Stan model index reference page (#612)
- enabled site search (#614)
- added a real-time Rt exercise and callout to the renewal session (#615)
- plotted the forecast reproduction number over the forecast horizon (#639)
- added an optional dropdown on baselines to the forecasting concepts session (#641)
- added missing ensemble forecasting citations and cited Bracher et al. 2021 for over/underprediction (#648, #604)
- marked optional content consistently across the sessions and the timetable (#623, #625)
- updated learning outcomes to match course content (#611)
- corrected an overstated bias claim for ad-hoc censoring fixes (#634)
- highlighted printed Stan models in rendered output (#643)
- fixed broken LaTeX in the CRPS formula (#642)
nfidd 1.2.0
- made
add_delays()more flexible with configurable delay distributions and hospitalisation probability (#584) - added
save_warmupargument tonfidd_sample()(#584) - fixed Stan function extraction regex to handle
array[]return types (#584) - fixed forecasting model to generate forecast random walk in generated quantities rather than extending estimated parameters (#585)
- allowed zero-day delays in censored delay model (#585)
- added forecasting to the joint nowcasting with R model (#585)
- improved priors in joint nowcasting models (#585)
- added Stan reference documentation pages (#586)
- updated session content with improvements from SISMID (#587)
nfidd 1.1.2
- added the R version of
condition_onsets_by_report()
nfidd 1.1.1
- adapted
nfidd_cmdstan_model()to work with an include path option, and a model file name argument
nfidd 1.1.0
- fixed a bug in convolution function which affected the earliest part of convoluted time series #475.
- renamed
target_daytoorigin_dayfor clarity #465 - added
nffid_sample()function to speed up default inference #457 - replaced
vapplywith for loop inconvolve_with_delayfor clarity #433 - streamlined the use of logged and natural R #424
- added the
summarise_lognormal()function for mean/sd summarises #406
nfidd 1.0.0
In development version of the package and teaching material for teaching in Bangkok in November 2024.
This included a complete redevelopment of the package where what previously were snippets are now functions.